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1

Parallel I/O scheduling using randomized, distributed edge coloring algorithms

Dannie Durand, Ravi Jain, David Tseytlin

Journal:

Journal of Parallel and Distributed Computing

Year:

2003

Language:

english

File:

PDF, 403 KB

english, 2003

2

Diagnosing duplications – can it be done?

Dannie Durand, Rose Hoberman

Journal:

Trends in Genetics

Year:

2006

Language:

english

File:

PDF, 208 KB

english, 2006

3

Vertebrate evolution: doubling and shuffling with a full deck

Journal:

Trends in Genetics

Year:

2003

Language:

english

File:

PDF, 292 KB

english, 2003

4

[Lecture Notes in Computer Science] Comparative Genomics Volume 4751 || Multi-break Rearrangements: From Circular to Linear Genomes

Tesler, Glenn, Durand, Dannie

Year:

2007

Language:

english

File:

PDF, 570 KB

english, 2007

5

How old is my gene?

Capra, John A., Stolzer, Maureen, Durand, Dannie, Pollard, Katherine S.

Journal:

Trends in Genetics

Year:

2013

Language:

english

File:

PDF, 625 KB

english, 2013

6

Tests for Gene Clustering

Durand, Dannie, Sankoff, David

Journal:

Journal of Computational Biology

Year:

2003

Language:

english

File:

PDF, 406 KB

english, 2003

7

Preface

Tesler, Glenn, Durand, Dannie

Journal:

Journal of Computational Biology

Year:

2008

Language:

english

File:

PDF, 52 KB

english, 2008

8

A Hybrid Micro–Macroevolutionary Approach to Gene Tree Reconstruction

Durand, Dannie, Halldórsson, Bjarni V., Vernot, Benjamin

Journal:

Journal of Computational Biology

Year:

2006

Language:

english

File:

PDF, 203 KB

english, 2006

9

Graph Theoretical Insights into Evolution of Multidomain Proteins

Przytycka, Teresa, Davis, George, Song, Nan, Durand, Dannie

Journal:

Journal of Computational Biology

Year:

2006

Language:

english

File:

PDF, 417 KB

english, 2006

10

NOTUNG: A Program for Dating Gene Duplications and Optimizing Gene Family Trees

Chen, Kevin, Durand, Dannie, Farach-Colton, Martin

Journal:

Journal of Computational Biology

Year:

2000

Language:

english

File:

PDF, 353 KB

english, 2000

11

The Statistical Analysis of Spatially Clustered Genes under the Maximum Gap Criterion

Hoberman, Rose, Sankoff, David, Durand, Dannie

Journal:

Journal of Computational Biology

Year:

2005

Language:

english

File:

PDF, 306 KB

english, 2005

12

Reconciliation with Non-Binary Species Trees

Vernot, Benjamin, Stolzer, Maureen, Goldman, Aiton, Durand, Dannie

Journal:

Journal of Computational Biology

Year:

2008

Language:

english

File:

PDF, 457 KB

english, 2008

13

[Lecture Notes in Computer Science] Comparative Genomics Volume 4751 ||

Tesler, Glenn, Durand, Dannie

Year:

2007

Language:

english

File:

PDF, 4.45 MB

english, 2007

14

TWO PLUS TWO DOES NOT EQUAL THREE: STATISTICAL TESTS FOR MULTIPLE GENOME COMPARISON

RAGHUPATHY, NARAYANAN, HOBERMAN, ROSE, DURAND, DANNIE

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2008

Language:

english

File:

PDF, 668 KB

english, 2008

15

Sequence Similarity Network Reveals Common Ancestry of Multidomain Proteins

Song, Nan, Joseph, Jacob M., Davis, George B., Durand, Dannie, Vogel, Christine

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 976 KB

english, 2008

16

[ACM Press the fourth annual international conference - Tokyo, Japan (2000..-..)] Proceedings of the fourth annual international conference on Computational molecular biology - RECOMB '00 - Notung

Chen, Kevin, Durand, Dannie, Farach-Colton, Martin

Year:

2000

Language:

english

File:

PDF, 900 KB

english, 2000

17

[ACM Press the sixth annual international conference - Washington, DC, USA (2002.04.18-2002.04.21)] Proceedings of the sixth annual international conference on Computational biology - RECOMB '02 - Tests for gene clustering

Durand, Dannie, Sankoff, David

Year:

2002

Language:

english

File:

PDF, 2.04 MB

english, 2002

18

Distributed scheduling algorithms to improve the performance of parallel data transfers

Durand, Dannie, Jain, Ravi, Tseytlin, David

Journal:

ACM SIGARCH Computer Architecture News

Year:

1994

Language:

english

File:

PDF, 575 KB

english, 1994

19

[ACM Press the seventh annual ACM symposium - Santa Barbara, California, United States (1995.06.24-1995.06.26)] Proceedings of the seventh annual ACM symposium on Parallel algorithms and architectures - SPAA '95 - Applying randomized edge coloring algorithms to distributed communication

Durand, Dannie, Jain, Ravi, Tseytlin, David

Year:

1995

Language:

english

File:

PDF, 1.05 MB

english, 1995

20

Robustness of birth-death and gain models for inferring evolutionary events

Stolzer, Maureen, Wasserman, Larry, Durand, Dannie

Journal:

Year:

2014

Language:

english

File:

PDF, 1.79 MB

english, 2014

21

Xenolog classification

Darby, Charlotte A., Stolzer, Maureen, Ropp, Patrick J., Barker, Daniel, Durand, Dannie

Journal:

Year:

2016

Language:

english

File:

PDF, 534 KB

english, 2016

22

Event inference in multidomain families with phylogenetic reconciliation

Maureen Stolzer,Katherine Siewert,Han Lai,Minli Xu,Dannie Durand

Journal:

BMC Bioinformatics

Year:

2015

Language:

english

File:

PDF, 2.72 MB

english, 2015

23

Gene Acquisition by a Distinct Phyletic Group within Streptococcus pneumoniae Promotes Adhesion to the Ocular Epithelium

Antic, Irena, Brothers, Kimberly M., Stolzer, Maureen, Lai, Han, Powell, Evan, Eutsey, Rory, Cuevas, Rolando A., Miao, Xinyu, Kowalski, Regis P., Shanks, Robert M. Q., Durand, Dannie, Hiller, N. Luisa

Journal:

Year:

2017

Language:

english

File:

PDF, 1.41 MB

english, 2017

24

Selection, periodicity and potential function for Highly Iterative Palindrome-1 (HIP1) in cyanobacterial genomes

Xu, Minli, Lawrence, Jeffrey G, Durand, Dannie

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 1.73 MB

english, 2018

25

Flexibility and constraint: Evolutionary remodeling of the sporulation initiation pathway in Firmicutes

Davidson, Philip, Eutsey, Rory, Redler, Brendan, Hiller, N. Luisa, Laub, Michael T., Durand, Dannie, Kearns, Daniel B.

Journal:

Year:

2018

Language:

english

File:

PDF, 31.70 MB

english, 2018

26

P-POD, The Princeton Protein Orthology Database, as a Tool for Identifying Gene Function

Livstone, Michael, Oughtred, Rose, Heinicke, Sven, Kang, Fan, Vernot, Benjamin, Goldman, Aiton, Durand, Dannie, Botstein, David, Dolinski, Kara

Journal:

Bioentrepreneur

Year:

2009

Language:

english

File:

PDF, 2.26 MB

english, 2009

27

P-POD, The Princeton Protein Orthology Database, as a Tool for Identifying Gene Function

Livstone, Michael, Oughtred, Rose, Heinicke, Sven, Kang, Fan, Vernot, Benjamin, Goldman, Aiton, Durand, Dannie, Botstein, David, Dolinski, Kara

Journal:

Bioentrepreneur

Year:

2009

File:

PDF, 2.26 MB

2009